import(BiocGenerics)
importFrom(biomaRt, useMart, getBM, getSequence)
importFrom(multtest, mt.rawp2adjp)
importFrom(limma, vennCounts,vennDiagram)
importFrom(stats, phyper)
importClassFrom(graph, "graphNEL")
importFrom(graph, ugraph)
importFrom(RBGL, 
           connectedComp)
importFrom(BiocInstaller, biocLite)
import(IRanges)
import(Biostrings)
import(BSgenome)
import(GO.db)
import(grid)
import(VennDiagram)
import(GenomicFeatures)
import(GenomicRanges)
importMethodsFrom(AnnotationDbi, mget, get)
export( 
       addAncestors,  
       addGeneIDs,
       annotatePeakInBatch, 
       assignChromosomeRegion, 
       BED2RangedData, 
       binOverFeature,
       condenseMatrixByColnames, 
       convert2EntrezID,
       countPatternInSeqs,
       egOrgMap,
       findOverlappingPeaks,
       findOverlapsOfPeaks,
       getAllPeakSequence, 
       getAnnotation, 
       getEnrichedGO,
       getEnrichedPATH, 
       getUniqueGOidCount, 
       getVennCounts,
       GFF2RangedData, 
       hyperGtest,
       makeVennDiagram, 
       peaksNearBDP,
       summarizePatternInPeaks,
       toGRanges, 
       translatePattern,
       write2FASTA)
