043c1c0c5998e128357e76609b632da1 *DESCRIPTION
52df13e172c09d0498331b256f3943e1 *INDEX
bb087882b665fe8e24160a58aedd00ce *LICENSE
67cd4eebfd203a72debf1c02d21954b1 *Meta/Rd.rds
d2c51e64746b3e8ece34f9e5f0a68002 *Meta/data.rds
11a7e962736b6089addb6c9f2700a1aa *Meta/hsearch.rds
f9b05a0a30a42fa21cf14a8366b835c4 *Meta/links.rds
29da13e6ad8c1c1ab02bdd0c55be5423 *Meta/nsInfo.rds
06306058caa97c96d8b937723834b5ca *Meta/package.rds
01e5dc0cd5bdcdf59011fd6ac44609ab *Meta/vignette.rds
8d8f500f8c7a9b2dff8631b56d147442 *NAMESPACE
ebf0fc819595d631b8bf280c4b049940 *R/CNEr
890010e6d278debedcbc7b15d86c7138 *R/CNEr.rdb
dc40d79d96449592938a06141707be1a *R/CNEr.rdx
4d3e8351772649d328ebe10dc44743b5 *data/CNEDanRer7Hg19.rda
4bccccc3af1a32e7f3dfd3e55d70736c *data/CNEHg19DanRer7.rda
eff1642cbb5c189bb94b7d130c74ca83 *data/axisTrack.rda
121ba183adf4a05c8f1a79a5d0ff622e *data/axtDanRer7Hg19.rda
cf26fca2bc1823909e52063fc3f93b94 *data/axtHg19DanRer7.rda
db35fb5e2e1d0905bc4723424de08fe6 *data/cneBlatedDanRer7Hg19.rda
5775d1d647bac07934fb17f470a938f7 *data/cneHg19DanRer7_45_50.rda
ff81c4112f740b9c1fb0648141fcabee *data/cneHg19DanRer7_48_50.rda
6f8de4bd0d1ad0f70874369b94761283 *data/cneHg19DanRer7_49_50.rda
0304f7ed48c725de1004c0cf40dd6c4d *data/cpgIslands.rda
401af71eabf02ebfc9c0d4b0a43dbaa8 *data/finalCNE.rda
14e6ddec0c6ba53c286771cbceef8211 *data/ideoTrack.rda
f18db11fe1a2be1e9a1530b99e38a16e *data/qSizesDanRer7.rda
3968fcb45b4456a38e4f0684ae9d6ac0 *data/qSizesHg19.rda
6a3b6f5d92ce92e440f8ec554df6687a *data/refGenes.rda
52c4279f3cb6a953375e93ac1f79ab3a *doc/CNEr.R
28369ace1d013465c0f7098da49ae351 *doc/CNEr.Rnw
41950761c5d4a2b90e20642775299a36 *doc/CNEr.pdf
333804afa6ced314acd03df636edd237 *doc/index.html
3653df061208be57aab114a13d0fcba9 *extdata/cne.sqlite
0fdd3eb7a81a346d2286e6441fc722e6 *extdata/danRer7.hg19.net.axt
1ebd48b23b13d186884d12a8a8ad61eb *extdata/filter_regions.danRer7.bed
f25dd58fed25d072490ad1c0e5383385 *extdata/filter_regions.hg19.bed
4ec79a4902d3d315ddf7bb1ccc39b8ac *extdata/hg19.danRer7.net.axt
8a097ddae1735c766705c687a362dd0e *help/AnIndex
37eb947f95af6ec5f0288235f8d986a0 *help/CNEr.rdb
46e7c5a609bf4fec6b10c1a2690809bf *help/CNEr.rdx
d36a41c1539f9181d6e52419e782d27e *help/aliases.rds
e68817aff15c5b142a2eec00acd20848 *help/paths.rds
153402749689b22bd3f5f40b01b865da *html/00Index.html
0629445e5f3de06acbaf6e4013c7deca *html/R.css
ef53e26c056ccc9d5831cfd8fa9f6a01 *libs/i386/CNEr.dll
b2f251552f97e12c2fcd73ad8e5c2c03 *libs/x64/CNEr.dll
3b502ef13330de1cd98dc4288a6f43d1 *obsolete/ceScan.r
d14cd8fb9911e5da6a2ba93af6d5974a *obsolete/ceScanR.r
0b52e0839eedfa011db6788f30472403 *obsolete/class.r
cdd26c6f3a003ce2e80db8921c7a7857 *obsolete/src/ceScan.c
b9b504316a8eeb190646972e165f979f *obsolete/src/ceScanBranch1.c
ed4391ac6a30aa3da32d63d7cbf5b17a *obsolete/src/ceScanBranch2.c
0a1fe70559c587a9104001f5203af75d *obsolete/src/compile
e6743f23d7e0582ddd22bf9fc739808b *scripts/pipeline.r
e75e7c0fe1da8707d0b79c12ae0e3015 *scripts/prepareFiles.r
5ff3c3d0b4759496b2725175479985a1 *scripts/usePrecomputed.r
7f39245e994e83547594a163edcbfb12 *unitTests/test_reverseCigar.R
10582b9c3b602570483b6823de3f150f *unitTests/test_subAxt.R
