Axt-class               Class '"Axt"'
CNE-class               Class '"CNE"'
CNEDanRer7Hg19          CNEHg19DanRer7 and CNEHg19DanRer7 dataset
CNEDensity-methods      CNEDensity function
axisTrack               Example data for plotting annotation.
axtDanRer7Hg19          The dataset axtDanRer7Hg19, axtHg19DanRer7
axtInfo                 axtInfo function
binFromCoordRange       UCSC bin indexing system utility functions
blatCNE                 Wrapper function of blat for CNEs
ceScan-methods          ceScan function
ceScanOneStep           ceScanOneStep function
cneBlatedDanRer7Hg19    The dataset cneBlatedDanRer7Hg19
cneHg19DanRer7_45_50    These datasets of CNE density values.
cneMerge                CNE merge function
fetchChromSizes         fetchChromSizes function.
finalCNE                finalCNE dataset
qSizesDanRer7           The chromosome sizes data.
queryCNEData            Query the CNEData package to fetch the CNEs
readAxt                 readAxt function.
readBed                 readBed function
readCNERangesFromSQLite
                        readCNERangesFromSQLite function
reverseCigar            reverseCigar function
saveCNEToSQLite-methods
                        saveCNEToSQLite function
subAxt-methods          'subAxt' method
writeAxt                'writeAxt' function
