# Chromosmal Aberrations Finder in Expression data

## Documentation for package ‘CAFE’ version 1.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

CAFE-package | Chromosomal Aberrations Finder in Expression data
armStats | Find aberrations with chromosome arm resolution
bandStats | Find aberrations with cytoband resolution
CAFE | Chromosomal Aberrations Finder in Expression data
CAFE_data | CAFE data set
chromosomeStats | Find aberrations with whole-chromosome resolution
cliSubset | Subset data with a CLI
discontPlot | Plot with discontinuous smoother
discontSmooth | A discontinuous smoother
facetPlot | Plot all chromosomes horizontally next to each other
fisher.method | Combines pvalues by using Fisher's method
guiSubset | Subset data with a GUI
ProcessCels | Processing CEL files
rawPlot | Plot without any smoother
slidPlot | Plot with sliding average smoother
slidSmooth | A moving average smoother