Package: BubbleTree
Type: Package
Title: A method to elucidate purity and clonality in tumors using copy
        number ratio and allele frequency
Version: 1.0.0
Date: 2014-12-04
Author: Wei Zhu <zhuw@medimmune.com> Michael Kuziora
        <kuzioram@medimmune.com> Brandon Higgs <higgsb@medimmune.com>
Maintainer: Wei Zhu <zhuw@medimmune.com>
Description: BubbleTree utilizes homogenous pertinent somatic copy
        number alterations (SCNAs) as markers of tumor clones to
        extract estimates of tumor ploidy, purity and clonality.
Depends: R (>= 3.0)
Imports: GenomicRanges, IRanges, plyr, geosphere, mixdist, dplyr, shape
biocViews: CopyNumberVariation
License: GPL (>=3.1)
Suggests: BiocStyle, knitr, rmarkdown
VignetteBuilder: knitr
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2015-04-17 05:49:14 UTC; biocbuild
Built: R 3.2.0; ; 2015-04-17 06:56:41 UTC; windows
