BRCA_binary_matrix      TCGA Brest Cancer data
BiRewire-package        The BiRewire package
birewire.analysis.bipartite
                        Analysis of Jaccard similarity trends across
                        switching steps.
birewire.analysis.undirected
                        Analysis of Jaccard similarity trends across
                        switching steps.
birewire.bipartite.from.incidence
                        Converts an incidence matrix into a bipartite
                        graph.
birewire.rewire.bipartite
                        Efficient rewiring of bipartite graphs
birewire.rewire.bipartite.and.projections
                        Analysis and rewiring function processing a
                        bipartite graphs and its two projections
birewire.rewire.undirected
                        Efficient rewiring of undirected graphs
birewire.sampler.bipartite
                        Efficient generation of a null model for a
                        given bipartite graph
birewire.sampler.undirected
                        Efficient generation of a null model for a
                        given undirected graph
birewire.similarity     Compute the Jaccard similarity index between
                        two binary matrices with the same number of
                        non-null entries and the sam row- and
                        column-wise sums.
birewire.visual.monitoring.bipartite
                        Visual monitoring of the Markov chain
                        underlying the SA for directed graphs.
birewire.visual.monitoring.undirected
                        Visual monitoring of the Markov chain
                        underlying the SA for undirected graphs.
