# Analysis of big data from aCGH experiments using parallel computing and ff objects

## Documentation for package ‘ADaCGH2’ version 2.8.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

cutFile | Cut a file and return individual columns
inputEx | A fictitious aCGH data set
inputEx-sp | A fictitious aCGH data set
inputEx.nona | A fictitious aCGH data set
inputToADaCGH | Convert CGH data to ff or RAM objects for use with ADaCGH2
outputToCGHregions | ADaCGH2 output as input to CGHregions
pChromPlot | Segment plots for aCGH as PNG
pSegment | Parallelized/"unified" versions of several aCGH segementation algorithms/methods
pSegmentBioHMM | Parallelized/"unified" versions of several aCGH segementation algorithms/methods
pSegmentCGHseg | Parallelized/"unified" versions of several aCGH segementation algorithms/methods
pSegmentDNAcopy | Parallelized/"unified" versions of several aCGH segementation algorithms/methods
pSegmentGLAD | Parallelized/"unified" versions of several aCGH segementation algorithms/methods
pSegmentHaarSeg | Parallelized/"unified" versions of several aCGH segementation algorithms/methods
pSegmentHMM | Parallelized/"unified" versions of several aCGH segementation algorithms/methods
pSegmentWavelets | Parallelized/"unified" versions of several aCGH segementation algorithms/methods