Package: paxtoolsr
Type: Package
Title: PaxtoolsR: Access Pathways from Multiple Databases through
        BioPAX and Pathway Commons
Version: 1.2.1
Date: 2015-06-01
Author: Augustin Luna
Maintainer: Augustin Luna <lunaa@cbio.mskcc.org>
Depends: R (>= 3.1.1), rJava (>= 0.9-4), XML, RCurl, rjson, plyr
Suggests: testthat, knitr, BiocStyle, rmarkdown, RColorBrewer, igraph,
        biomaRt, estrogen, affy, hgu95av2, hgu95av2cdf, limma
SystemRequirements: Java (>= 1.5)
License: LGPL-3
Description: The package provides a set of R functions for interacting with BioPAX OWL
    files using Paxtools and the querying Pathway Commons (PC) molecular interaction
    database that are hosted by the Computational Biology Center at Memorial Sloan-Kettering Cancer
    Center (MSKCC). Pathway Commons databases include: BIND, BioGRID, CORUM, CTD, DIP, DrugBank, HPRD, HumanCyc,
    IntAct, KEGG, MirTarBase, Panther, PhosphoSitePlus, Reactome, RECON, TRANSFAC.
VignetteBuilder: knitr
LazyData: true
biocViews: GeneSetEnrichment, GraphAndNetwork, Pathways, Software,
        SystemsBiology, NetworkEnrichment, Network
URL: https://bitbucket.org/cbio_mskcc/paxtoolsr
NeedsCompilation: no
Packaged: 2015-06-03 05:49:37 UTC; biocbuild
Built: R 3.2.0; ; 2015-06-03 16:59:24 UTC; unix
