Package: GGtools
Title: software and data for analyses in genetics of gene expression
Version: 5.4.0
Author: VJ Carey <stvjc@channing.harvard.edu>
Description: software and data for analyses in genetics of gene expression
	and/or DNA methylation
Suggests: GGdata, illuminaHumanv1.db, SNPlocs.Hsapiens.dbSNP.20120608,
        multtest, aod, rmeta
Depends: R (>= 2.14), GGBase (>= 3.19.7), data.table, parallel
Imports: methods, utils, stats, BiocGenerics, snpStats, ff, Rsamtools,
        AnnotationDbi, Biobase, bit, VariantAnnotation, hexbin,
        rtracklayer, Gviz, stats4, S4Vectors, IRanges, GenomeInfoDb,
        GenomicRanges, iterators, Biostrings, ROCR, biglm, ggplot2,
        reshape2
Enhances: MatrixEQTL, Homo.sapiens, foreach, doParallel, gwascat
Maintainer: VJ Carey <stvjc@channing.harvard.edu>
License: Artistic-2.0
biocViews: Genetics, GeneExpression, GeneticVariability, SNP
LazyLoad: yes
Packaged: 2015-04-17 02:02:22 UTC; biocbuild
Collate: AllClasses.R AllGenerics.R eqtlTests.R managers.R topFeats.R
        gwSnpTests.R snpsCisToGenes.R relocate.R topSnps.R
        snplocsDefault.R transutils.R vcfutils.R eqtlEstimates.R
        alleq.R meta.R eqME.R meta.all.R best.trans.eQTLs.R
        meta.transScores.R summInfra.R bindmaf.R fdr.all.cis.R pifdr.R
        getFDR.R cisConfig.R thinclass.R harvest.R scoredist.R binqq.R
        gffprocess.R cisEqTools.R modutils.R seqinfo.R pureSensSoft.R
        cisa.R scan.R basicappraise.R Eqappr.R
NeedsCompilation: no
Built: R 3.2.0; ; 2015-04-17 15:04:29 UTC; unix
