Package: ChAMP
Type: Package
Title: Chip Analysis Methylation Pipeline for Illumina
        HumanMethylation450
Version: 1.6.2
Date: 2015-09-16
Description: The package includes quality control metrics, a selection
        of normalisation methods and novel methods to identify
        differentially methylated regions and to highlight copy number
        alterations. In addition there is a method to help calculate hmC using BS and oxBS samples.
Authors@R: c(person("Tiffany", "Morris", role = c("cre", "aut"),
                    email = "champ450k@gmail.com"),
             person("Lee", "Butcher", role = "ctb"),
             person("Andrew", "Feber", role = "ctb"),
	     person("Andrew", "Teschendorff", role = "ctb"),
	     person("Ankur", "Chakravarthy", role = "ctb"))
License: GPL-3
Depends: R (>= 3.0.1), minfi, ChAMPdata, Illumina450ProbeVariants.db
Imports: sva, IlluminaHumanMethylation450kmanifest, limma, RPMM,
        DNAcopy, preprocessCore, impute, marray, wateRmelon, plyr,
        IRanges, GenomicRanges
biocViews: Microarray, MethylationArray, Normalization, TwoChannel,
        CopyNumber
Author: Tiffany Morris [cre, aut],
  Lee Butcher [ctb],
  Andrew Feber [ctb],
  Andrew Teschendorff [ctb],
  Ankur Chakravarthy [ctb]
Maintainer: Tiffany Morris <champ450k@gmail.com>
NeedsCompilation: no
Packaged: 2015-09-17 04:32:30 UTC; biocbuild
Built: R 3.2.2; ; 2015-09-17 14:24:08 UTC; unix
