# SiRNA correction for seed mediated off-target effect

## Documentation for package ‘scsR’ version 1.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

add_rank_col | add_rank_col
add_seed | add_seed
benchmark_shared_hits | benchmark_shared_hits
bydf | bydf
bydfa | bydf
check_consistency | check_consistency
compare_sorted_geneSets | compare_sorted_geneSets
create_sd_matrix | create_sd_matrix
delColDf | delColDf
delete_undefined_rows | delete_undefined_rows
enrichment_geneSet | enrichment_geneSet
enrichment_heatmap | enrichment_heatmap
get_sd_quant | get_sd_quant
get_seed_oligos_df | get_seed_oligos_df
intersectAll | intersectAll
launch_RSA | launch_RSA
median_replicates | median_replicates
miRBase_20 | miRBase version 20 mature sequences (homo sapiens)
OPIrsa | OPIrsa
OPIrsaScore | OPIrsaScore
plot_effective_seeds_head | plot seeds utility methods
plot_screen_hits | plot_screen_hits
plot_screen_seeds_count | plot seeds utility methods
plot_seeds_oligo_count | plot seeds utility methods
plot_seed_score_sd | plot seeds utility methods
randomizeInner | randomizeInner
randomSortOnVal | randomSortOnVal
removeSharedOffTargets | removeSharedOffTargets
renameColDf | renameColDf
replace_non_null_elements | replace_non_null_elements
seeds_analysis | seeds_analysis
seed_correction | seed_correction
seed_correction_pooled | seed_correction_pooled
seed_removal | seed_removal
sortInner | sortInner
split_df | split_df
transcribe_seqs | transcribe_seqs
uuk_screen | cell number phenotype of the Uukuniemi QIAGEN siRNA genome wide screen
uuk_screen_dh | cell number phenotype of the Uukuniemi DHARMACON siRNA genome wide screen