Package: ToPASeq
Type: Package
Title: Package for Topology-based Pathway Analysis of RNASeq data
Version: 1.2.0
Date: 2014-27-05
Author: Ivana Ihnatova, Eva Budinska
Maintainer: Ivana Ihnatova <ihnatova@iba.muni.cz>
Description: Implementation of seven methods for topology-based pathway
        analysis of both RNASeq and microarray data: SPIA, DEGraph,
        TopologyGSA, TAPPA, TBS, PWEA and a visualization tool for a
        single pathway.
Depends: graphite, gRbase, graph, locfit, Rgraphviz
Imports: R.utils, methods, Biobase, parallel, edgeR, DESeq2,
        GenomicRanges, RBGL, DESeq, fields, limma, TeachingDemos,
        KEGGgraph, qpgraph, clipper
Suggests: RUnit, BiocGenerics, gageData, DEGraph, plotrix
LinkingTo: Rcpp
LazyData: yes
License: AGPL-3
biocViews: Software, GeneExpression, NetworkEnrichment,
        GraphAndNetwork, RNASeq, Visualization, Microarray, Pathways,
        DifferentialExpression,
NeedsCompilation: yes
Packaged: 2015-04-17 04:17:07 UTC; biocbuild
Built: R 3.2.0; x86_64-apple-darwin10.8.0; 2015-04-17 11:28:14 UTC; unix
