addFragments	addFragments
addPeaks	addPeaks
addViewpointFrags	addViewpointFrags
combineFragEnds	combineFragEnds
countFragmentOverlaps	countFragmentOverlaps
countFragmentOverlapsSecondCutter	countFragmentOverlapsSecondCutter
distFitMonotone	distFitMonotone
distFitMonotoneSymmetric	distFitMonotoneSymmetric
fc	fc
fcf	fcf
findViewpointFragments	findViewpointFragments
FourC	FourC
FourC-class	FourC
getAllResults	getAllResults
getDifferences	getDifferences
getDistAroundVp	getDistAroundVp
getNormalizationFactors	getNormalizationFactors
getReferenceSeq	getReferenceSeq
getZScores	getZScores
normalizeRPM	normalizeRPM
plotDifferences	plotDifferences
plotFits	plotFits
plotNormalizationFactors	plotNormalizationFactors
plotScatter	plotScatter
plotZScores	plotZScores
smoothCounts	smoothCounts
smoothHitPerCent	smoothHitPerCent
writeTrackFiles	writeTrackFiles
