# Report of DEG analysis

## Documentation for package ‘DEGreport’ version 1.2.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

createReport | Create report of RNAseq DEG anlaysis
degBI | Get the estimates of the fold change (FC) mean from a FC distribution using bayesian inference
degBIcmd | Apply bayesian inference to estimate the average fold change (FC) of a distribution
degComb | Get random combinations of two groups
degFC | get the FC for each gene between two groups
degMB | Distribution of expression of DE genes compared to the background
degMean | Distribution of pvalues by expression range
degMV | Correlation of the standard desviation and the mean of the abundance of a set of genes.
degNcomb | Get number of potential combinations of two vectors
degObj | Create a deg object that can be used to plot expression values at shiny server:runGist(9930881)
degPR | plot the correlation between the rank according estimator and the rank according FC
degRank | Get rank data frame with best score on the top
DEGreportSet | list object for DE genes betwen Male and Females
degVar | Distribution of pvalues by standard desviation range
degVB | Distribution of the standard desviation of DE genes compared to the background
figurebyexp | Wrap figure from 'degMB' into a Nozzle object
figurebyvar | Wrap figure from 'degVB' into a Nozzle object
figurepvaluebyexp | Wrap figure from 'degMean' into a Nozzle object
figurepvaluebyvar | Wrap figure from 'degVar' into a Nozzle object
figurepvaluebyvarexp | Wrap figure from 'degMV' into a Nozzle object
figurerank | Wrap figure from 'plotrank' into a Nozzle object
geneInfo | data.frame with chromose information for each gene
humanSexDEedgeR | edgeR object for DE genes betwen Male and Females
tablerank | Create table for Nozzle report