# Experimental Data Package: harbChIP

## Documentation for package ‘harbChIP’ version 1.3.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

allhex | utility function: get all hexamers in upstream sequence for an ORF
buildUpstreamSeqs2 | workflow component - build an upstreamSeqs instance from a FASTA read
chkAllUS | analyze relationship between motif frequency and binding intensity for selected motif and TF
chkMotif4TF | analyze relationship between motif frequency and binding intensity for selected motif and TF
getUpstream | Class "upstreamSeqs"
harbChIP | Experimental Data Package: harbChIP
keys | Class "upstreamSeqs"
keys-method | Class "upstreamSeqs"
Nmers | Class "upstreamSeqs"
Nmers-method | Class "upstreamSeqs"
organism | Class "upstreamSeqs"
organism-method | Class "upstreamSeqs"
sceUpstr | Biostrings representations of S. cerevisiae upstream regions
seqs | Class "upstreamSeqs"
seqs-method | Class "upstreamSeqs"
show-method | Class "upstreamSeqs"
upstreamSeqs-class | Class "upstreamSeqs"