This folder contains the tools used for making the sqLite database contained in
this package from the raw PROVEAN/SIFT files. The PROVEAN tools has replaced
the SIFT tool.

Homepage for PROVEAN :

  http://provean.jcvi.org/index.php 

Making the sqLite database :

  1. Download dbsnp137.coding.variants.prediction.tsv.gz from

       http://provean.jcvi.org/downloads/ 

  2. Uncompress the downloaded file.
     The uncompressed file is the "source file" located here :

       ~/SIFTForge/srcdata/SIFT.Hsapiens.dbSNP137/downloads

     NB: The output format is described here :

       http://provean.jcvi.org/help.php 

  3. A single file was used to forge the database :

       dbsnp137.coding.variants.prediction.tsv 

  4. Adjust settings in createPROVEANDb.R and run it.
