# RUNIT TEST PROTOCOL--Tue Oct 14 07:39:17 2014

Number of test functions: 61

Number of errors: 0

Number of failures: 0

### 1 Test suite

Name | Test functions | Errors | Failures
--- | --- | --- | ---
xcms unit testing | 61 | 0 | 0

### Details

##### Test Suite: xcms unit testing

Test function regexp: ^test.+
Test file regexp: ^runit.+\.[rR]$
Involved directory:
D:/biocbld/bbs-3.0-bioc/meat/xcms.buildbin-libdir/xcms/unitTests

- Test file: runit.absentPresent.R
  - testPresentAbsentSum: (8 checks) ... OK (2.33 seconds)
  - testPresentAbsentSumAfterFillPeaks: (8 checks) ... OK (4.32 seconds)
- Test file: runit.diffreport.R
  - testAnova: (0 checks) ... OK (4.71 seconds)
  - testDiffreport: (0 checks) ... OK (3.59 seconds)
  - testDiffreportMinSamples: (0 checks) ... OK (6.22 seconds)
- Test file: runit.fillPeaks.R
  - test.fillPeaksColumns: (2 checks) ... OK (18.45 seconds)
  - testFillPeaksPar: (1 checks) ... OK (9.14 seconds)
  - testFilledFlag: (1 checks) ... OK (3.58 seconds)
- Test file: runit.findPeaksCentWave.fitGauss.plot.R
  - test.findPeaksCentWave: (0 checks) ... OK (100.03 seconds)
- Test file: runit.findPeaksMassIfQuant.R
  - test.findPeaksMassIfQuant: (0 checks) ... OK (3.1 seconds)
- Test file: runit.getEIC.R
  - test.getEICretcor: (0 checks) ... OK (5.32 seconds)
  - test.getEICxraw: (0 checks) ... OK (0.03 seconds)
  - test.getEICxset: (0 checks) ... OK (3.57 seconds)
  - test.plotEIC: (0 checks) ... OK (0.05 seconds)
- Test file: runit.group.R
  - testGroupDensityOnePeak: (0 checks) ... OK (0.02 seconds)
  - testGroupNearest: (1 checks) ... OK (15.02 seconds)
- Test file: runit.msms.R
  - test.msn2xcmsRaw: (3 checks) ... OK (1.08 seconds)
  - test.xcmsRawms1: (0 checks) ... OK (0.06 seconds)
  - test.xcmsRawms123: (4 checks) ... OK (1.14 seconds)
  - test.xcmsSetms2cw: (0 checks) ... OK (0.69 seconds)
  - test.xcmsSetms2mf: (0 checks) ... OK (0.53 seconds)
- Test file: runit.obiwarp.R
  - test.obiwarp.cor: (0 checks) ... OK (12.31 seconds)
  - test.obiwarp.cor_opt: (0 checks) ... OK (3.7 seconds)
  - test.obiwarp.cov: (0 checks) ... OK (10.75 seconds)
  - test.obiwarp.default: (0 checks) ... OK (3.82 seconds)
  - test.obiwarp.euc: (0 checks) ... OK (18.28 seconds)
  - test.obiwarp.local: (0 checks) ... OK (3.86 seconds)
  - test.obiwarp.prd: (0 checks) ... OK (13.63 seconds)
- Test file: runit.phenoData.R
  - testMultiFactor: (0 checks) ... OK (1.62 seconds)
  - testMultiFactorDiffreport: (0 checks) ... OK (3.62 seconds)
- Test file: runit.rawMat.R
  - test.rawMat: (1 checks) ... OK (0.05 seconds)
- Test file: runit.scanrage.R
  - test.xcmsRawScanrange.100: (1 checks) ... OK (0.23 seconds)
  - test.xcmsRawScanrange.first: (1 checks) ... OK (0.16 seconds)
  - test.xcmsRawScanrange.last: (1 checks) ... OK (0.5 seconds)
  - test.xcmsRawScanrange.none: (1 checks) ... OK (0.03 seconds)
- Test file: runit.snames.R
  - testAssignClass: (0 checks) ... OK (2.75 seconds)
  - testAssignNames: (0 checks) ... OK (2.59 seconds)
- Test file: runit.specDist.R
  - test.specDist: (3 checks) ... OK (0.06 seconds)
- Test file: runit.splitCombine.R
  - testCombine: (1 checks) ... OK (0 seconds)
  - testSplit: (1 checks) ... OK (0 seconds)
  - testSplitAll: (1 checks) ... OK (0.01 seconds)
  - testSplitFirst: (1 checks) ... OK (0.02 seconds)
  - testSplitLast: (1 checks) ... OK (0 seconds)
  - testSplitMiddle: (1 checks) ... OK (0.02 seconds)
  - testSplitNone: (1 checks) ... OK (0 seconds)
- Test file: runit.splitRaw.R
  - testSplitRawEven: (3 checks) ... OK (0.25 seconds)
  - testSplitRawFirst: (1 checks) ... OK (0.15 seconds)
  - testSplitRawLast: (1 checks) ... OK (0.42 seconds)
  - testSplitRawNone: (3 checks) ... OK (0.08 seconds)
  - testSplitRawOdd: (3 checks) ... OK (0.23 seconds)
- Test file: runit.unusedGroups.R
  - testGroup: (1 checks) ... OK (1.58 seconds)
- Test file: runit.writecdf.R
  - test.write.cdf: (2 checks) ... OK (1.14 seconds)
- Test file: runit.writemzdata.R
  - test.write.mzdata: (2 checks) ... OK (2.98 seconds)
  - test.writeMS2.mzdata: (2 checks) ... OK (4.7 seconds)
  - test.writeMSn.mzdata: (2 checks) ... OK (0.14 seconds)
  - test.writePolarity.mzdata: (1 checks) ... OK (0.97 seconds)
- Test file: runit.writemzquantml.R
  - test.write.mzQuantML: (1 checks) ... OK (7.86 seconds)
- Test file: runit.xcmsRawCopy.R
  - test.rawMat: (2 checks) ... OK (0.05 seconds)
- Test file: runit.xcmsSet.R
  - test.findPeaksCentWave: (2 checks) ... OK (2.03 seconds)
  - test.findPeaksMatchedFilter: (2 checks) ... OK (4.43 seconds)
  - test.xcmsSetParallel: (1 checks) ... OK (4.43 seconds)

Name | Value
--- | ---
platform | x86_64-w64-mingw32
arch | x86_64
os | mingw32
system | x86_64, mingw32
status | Patched
major | 3
minor | 1.1
year | 2014
month | 09
day | 24
svn rev | 66678
language | R
version.string | R version 3.1.1 Patched (2014-09-24 r66678)
nickname | Sock it to Me
host | MOSCATO1
compiler | NA