Package: tigre
==============

Version: 1.16.1

* More informative error messages

Version: 1.14.1

BUG FIXES

* Various fixes for non-cascade ODE model (i.e. model not using TF mRNA data)
  (thanks to Andrea Ocone for the report)

Version: 1.12.0

* Minor speed optimisation
* Minor documentation reorganisation and updates

Version: 1.8.0

NEW FEATURES

* Direct support for variances for Illumina Bead Array data from lumi.
* Prettier default plot style

BUG FIXES

* Fix to variance scaling in plots of models with TF mRNA measurements

Version: 1.6.1 [2011-04-26]

BUG FIXES

* Fix: target ranking now works with >= 10 known targets
  (thanks to Jake Michaelson for the report)

Version: 1.6.0
* Function documentation updates

Version: 1.4.2 [2011-02-14]
* Fix scoreList::sort when including NA values
* Fixes for working with non-Affymetrix data
* New citation information

Version: 1.4.1 [2011-01-19]
* Clarify output from model fitting and remove unnecessary warnings
* Minor documentation improvements

Version: 1.4.0
* Easier access to untransformed parameter values and other usability fixes
* Add functionality to introduce priors to parameters
* More sensible length scale bounds

Version: 1.3.2 [2010-10-08]
* Add database export for tigreBrowser
* Make kernel computation numerically more robust

Version: 1.2.1 [2010-09-20]
* Fix baseline log-likelihood computation
* Robustify against genes with constant zero expression
* Fix package name in data files
* Documentation and citation information updates

Version: 1.2.0
* Same as 1.0.0, due to version numbering glitch

Version: 1.0.0 [2010-04-22]
* Documentation and citation information updates.

Version: 0.9.4 [2010-04-12]
* Rename the package to tigre to avoid a clash with a package in CRAN.

Version: 0.9.3 (as tiger) [2010-04-07]
* Make GPPlot more robust against numerical problems.
* Fixes to GPRankTFs etc.

Version: 0.9.2 (as tiger) [2010-04-01]
* Initial version in Bioconductor.
