# Comparison between multiple levels of gene expression.

## Documentation for package ‘tRanslatome’ version 1.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

tRanslatome-package | tRanslatome
average.similarity.scores | labelLevelsGOSetsHelpfile
average.similarity.scores-method | Class 'GOsims'
CCComparison | Sample data set for tRanslatome
CCEnrichment | Sample data set for tRanslatome
computeDEGs | computeDEGsHelpfile
computeDEGs-method | Class 'TranslatomeDataset'
CVplot | CVplotDEGsHelpfile
CVplot-method | Class 'DEGs'
DEGs-class | Class 'DEGs'
DEGs.table | DEGsTableDEGsHelpfile
DEGs.table-method | Class 'DEGs'
enriched.table | enrichedtableenrichedSetsHelpfile
enriched.table-method | Class 'EnrichedSets'
EnrichedSets-class | Class 'EnrichedSets'
expressionMatrix | Sample data set for tRanslatome
FC.threshold | FCThresholdDEGsHelpfile
FC.threshold-method | Class 'DEGs'
getConditionA | getConditionATranslatomeDatasetHelpfile
getConditionA-method | Class 'TranslatomeDataset'
getConditionB | getConditionBTranslatomeDatasetHelpfile
getConditionB-method | Class 'TranslatomeDataset'
getConditionC | getConditionCTranslatomeDatasetHelpfile
getConditionC-method | Class 'TranslatomeDataset'
getConditionD | getConditionDTranslatomeDatasetHelpfile
getConditionD-method | Class 'TranslatomeDataset'
getConditionLabels | getConditionLabelsTranslatomeDatasetHelpfile
getConditionLabels-method | Class 'TranslatomeDataset'
getDataType | getDataTypeTranslatomeDatasetHelpfile
getDataType-method | Class 'TranslatomeDataset'
getDEGs | getDEGsTranslatomeDatasetHelpfile
getDEGs-method | Class 'TranslatomeDataset'
getDEGsMethod | getDEGsMethodDEGsHelpfile
getDEGsMethod-method | Class 'DEGs'
getExprMatrix | getExprMatrixTranslatomeDatasetHelpfile
getExprMatrix-method | Class 'TranslatomeDataset'
getLevelLabels | getLevelLabelsTranslatomeDatasetHelpfile
getLevelLabels-method | Class 'TranslatomeDataset'
GOComparison | GOComparisonHelpfile
GOComparison-method | Class 'GOsets'
GOEnrichment | GOEnrichmentHelpfile
GOEnrichment-method | Class 'DEGs'
GOsets-class | Class 'GOsets'
GOsims-class | Class 'GOsims'
Heatmap | HeatmapEnrichedHelpfile
Heatmap-method | Class 'EnrichedSets'
Heatmap-method | Class 'GOsets'
Histogram | HistogramHelpfile
Histogram-method | Class 'DEGs'
identity.matrix | labelLevelsGOSetsHelpfile
identity.matrix-method | Class 'GOsims'
IdentityPlot | IdentityPlotHelpfile
IdentityPlot-method | Class 'GOsims'
label.condition | labelConditionDEGsHelpfile
label.condition-method | Class 'DEGs'
label.level.DEGs | labelLevelDEGsHelpfile
label.level.DEGs-method | Class 'DEGs'
label.level.enriched | labelLevelsEnrichedSetsHelpfile
label.level.enriched-method | Class 'EnrichedSets'
limma.DEGs | Sample data set for tRanslatome
MAplot | MAplotHelpfile
MAplot-method | Class 'DEGs'
newTranslatomeDataset | newTranslatomeDatasetHelpfile
Radar | RadarEnrichedHelpfile
Radar-method | Class 'EnrichedSets'
Radar-method | Class 'GOsets'
regulatory.elements.counts | Sample data set for tRanslatome
regulatory.elements.regulated | Sample data set for tRanslatome
RegulatoryEnrichment | RegulatoryEnrichmentHelpfile
RegulatoryEnrichment-method | Class 'DEGs'
Scatterplot | ScatterplotHelpfile
Scatterplot-method | Class 'DEGs'
SDplot | SDplotHelpfile
SDplot-method | Class 'DEGs'
show-method | Class 'DEGs'
show-method | Class 'EnrichedSets'
show-method | Class 'GOsets'
show-method | Class 'TranslatomeDataset'
significance.threshold | significanceThresholdDEGsHelpfile
significance.threshold-method | Class 'DEGs'
similarity.matrix | similaritymatrixGOSetsHelpfile
similarity.matrix-method | Class 'GOsims'
SimilarityPlot | SimilarityPlotHelpfile
SimilarityPlot-method | Class 'GOsims'
tRanslatome | tRanslatome
translatome.analysis | Sample data set for tRanslatome
tRanslatomeData | Sample data set for tRanslatome
TranslatomeDataset-class | Class 'TranslatomeDataset'
tRanslatomeSampleData | Sample data set for tRanslatome