annotateProteinID	annotateProteinID
BiblioSpec	read.bibliospec
bibliospec	read.bibliospec
genSwathIonLib	genSwathIonLib
ionlibrary	specLSet-class
ionlibrary,specLSet-method	specLSet-class
iRT	iRTpeptides
irt	iRTpeptides
iRTpeptides	iRTpeptides
MRM	genSwathIonLib
peptideStd	peptideStd
peptideStd.redundant	peptideStd
plot	specLSet-class
plot,ANY-method	plot-methods
plot,specL-method	specL-class
plot,specL-methods	plot-methods
plot,specLSet-method	specLSet-class
plot,specLSet-methods	plot-methods
plot-methods	plot-methods
read.bibliospec	read.bibliospec
rt.input	specLSet-class
rt.input,specLSet-method	specLSet-class
rt.normalized	specLSet-class
rt.normalized,specLSet-method	specLSet-class
show,ANY-method	show-methods
show,specL-method	specL-class
show,specLSet-method	specLSet-class
show-methods	show-methods
Skyline	read.bibliospec
skyline	read.bibliospec
specL	genSwathIonLib
specL-class	specL-class
specLSet-class	specLSet-class
SWATH	genSwathIonLib
swath	genSwathIonLib
write.Spectronaut	write.Spectronaut-methods
write.Spectronaut,ANY-method	write.Spectronaut-methods
write.Spectronaut,specL-method	specL-class
write.Spectronaut,specL-methods	write.Spectronaut-methods
write.Spectronaut,specLSet-method	specLSet-class
write.Spectronaut,specLSet-methods	write.Spectronaut-methods
