CHANGES IN VERSION 1.1.7
------------------------

NEW FEATURES

    o Users can now control 'output_format' and 'clean' options from
        rmarkdown::render() when running derfinderReport()


CHANGES IN VERSION 1.1.3
------------------------

BUG FIXES

    o Adapted derfinderReport() to derfinder 1.1.5


CHANGES IN VERSION 0.99.0
-------------------------

NEW FEATURES

    o Preparing to submit to Bioconductor.

SIGNIFICANT USER-VISIBLE CHANGES

    o Updated the vignette and the package to work with recent versions of
        the packages this package depends on.
    o Renamed the package from derfinderReport to regionReport and
        generateReport() to derfinderReport(). In the future we will add
        another report for a general GRanges object.
    o Simplified derfinderReport()'s call by using advanced arguments.
    o Added Travis integration.


CHANGES IN VERSION 0.0.18
-------------------------

    o Now derfinderReport() has a 'chrsStyle' argument to match changes in 
    derfinder version 0.0.60. 'chrsStyle' is set to 'UCSC' by default.

CHANGES IN VERSION 0.0.17
-------------------------

SIGNIFICANT USER-VISIBLE CHANGES

    o Made more robust for cases where there is a small number of significant
        DERs: need at least 3 observations by chr for the chr to be included in
        the density plots.

CHANGES IN VERSION 0.0.16
-------------------------

SIGNIFICANT USER-VISIBLE CHANGES

    o MA-style plots now use the scaling factor.
    o Using a GAM smoother instead of loess for MA-style plots. Helps for cases
        with many regions.

CHANGES IN VERSION 0.0.13
-------------------------

SIGNIFICANT USER-VISIBLE CHANGES

    o Added a vignette

CHANGES IN VERSION 0.0.12
-------------------------

BUG FIXES

    o complying with BiocCheck version 1.0.0

CHANGES IN VERSION 0.0.11
-------------------------

SIGNIFICANT USER-VISIBLE CHANGES

    o genomicState data moved to derfinder 0.0.53

CHANGES IN VERSION 0.0.8
------------------------

SIGNIFICANT USER-VISIBLE CHANGES

    o Now requires knitrBootstrap 1.0.0
    o Matches derfinder version 0.0.49

CHANGES IN VERSION 0.0.3
------------------------

SIGNIFICANT USER-VISIBLE CHANGES

    o Matches derfinder version 0.0.34

CHANGES IN VERSION 0.0.1
-----------------------

NEW FEATURES

    o Migrated from derfinder
