Package: isobar
Title: Analysis and quantitation of isobarically tagged MSMS proteomics
        data
Description: isobar provides methods for preprocessing, normalization, and
    report generation for the analysis of quantitative mass spectrometry
    proteomics data labeled with isobaric tags, such as iTRAQ and TMT.
    Features modules for integrating and validating PTM-centric datasets
    (isobar-PTM). More information on http://www.ms-isobar.org.
Version: 1.12.2
Author: Florian P Breitwieser <fbreitwieser@cemm.oeaw.ac.at> and
   Jacques Colinge <jcolinge@cemm.oeaw.ac.at>, with contributions from 
   Xavier Robin <xavier.robin@unige.ch> and Florent Gluck  <florent.gluck@unige.ch>
Maintainer: Florian P Breitwieser <fbreitwieser@cemm.oeaw.ac.at>
biocViews: Proteomics, MassSpectrometry, Bioinformatics,
        MultipleComparisons, QualityControl
Depends: R (>= 2.10.0), Biobase, stats, methods, plyr
Imports: distr
Suggests: MSnbase, OrgMassSpecR, XML, biomaRt, ggplot2, RJSONIO, Hmisc,
        gplots, RColorBrewer, gridExtra, limma, boot, distr, DBI, MASS
LazyLoad: yes
License: LGPL-2
URL: http://www.ms-isobar.org
Collate: utils.R ProteinGroup-class.R IBSpectra-class.R isobar-import.R
        IBSpectra-plots.R NoiseModel-class.R Tlsd-class.R
        ratio-methods.R distr-methods.R sharedpep-methods.R
        report-utils-xls.R report-utils-tex.R report-utils.R
        metareport-utils.R ptm-methods.R MSnSet-methods.R zzz.R
Packaged: 2015-01-08 04:25:40 UTC; biocbuild
Built: R 3.1.2; ; 2015-01-08 10:37:28 UTC; windows
