# integrated Bayesian Modeling of eQTL data

## Documentation for package ‘iBMQ’ version 1.6.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

iBMQ-package | iBMQ : An Integrated Hierarchical Bayesian Model for Multivariate eQTL Mapping
calculateThreshold | Calculate PPA significance threshold leading to a desired false discovery rate
eqtlClassifier | Classifying the eQTLs
eqtlFinder | eqtlFinder
eqtlMcmc | Bayesian Multiple eQTL mapping using MCMC
gene | Gene expression from whole eye tissue from n = 68 BXD RIS mice.
genepos | Gene position data frame
genotype.liver | A set of 290 SNPs from 60 F2 mice.
hotspotFinder | hotspotFinder
iBMQ | iBMQ : An Integrated Hierarchical Bayesian Model for Multivariate eQTL Mapping
map.liver | SNP position data frame
phenotype.liver | Gene expression from liver tissue from n = 60 F2 mice.
PPA.liver | A matrix with Posterior Probabilities of Association
probe.liver | Gene position data frame
snp | A set of 1700 SNP from 68 BXD RIS mice.
snppos | SNP position data frame