# Generated by roxygen2 (4.0.1): do not edit by hand

export(addFeature)
export(addListNameToReads)
export(annotateSites)
export(blatListedSet)
export(blatSeqs)
export(chunkize)
export(clusterSites)
export(crossOverCheck)
export(decodeByBarcode)
export(dereplicateReads)
export(doRCtest)
export(extractFeature)
export(extractSeqs)
export(findAndRemoveVector)
export(findAndTrimSeq)
export(findBarcodes)
export(findIntegrations)
export(findLTRs)
export(findLinkers)
export(findPrimers)
export(findVector)
export(getIntegrationSites)
export(getSectorsForSamples)
export(getSonicAbund)
export(isuSites)
export(otuSites)
export(pairUpAlignments)
export(pairwiseAlignSeqs)
export(primerIDAlignSeqs)
export(pslCols)
export(pslToRangedObject)
export(read.BAMasPSL)
export(read.SeqFolder)
export(read.blast8)
export(read.psl)
export(read.sampleInfo)
export(read.seqsFromSector)
export(removeReadsWithNs)
export(replicateReads)
export(sampleSummary)
export(splitByBarcode)
export(splitSeqsToFiles)
export(startgfServer)
export(trimSeqs)
export(troubleshootLinkers)
export(vpairwiseAlignSeqs)
export(write.listedDNAStringSet)
export(write.psl)
import(BiocParallel)
import(Biostrings)
import(GenomicAlignments)
import(hiAnnotator)
import(plyr)
import(sonicLength)
import(xlsx)
