Package: geecc
Type: Package
Title: Gene set Enrichment analysis Extended to Contingency Cubes
Version: 1.0.0
Date: 2014-09-18
Author: Markus Boenn
Maintainer: Markus Boenn <markus.boenn@ufz.de>
Description: Use log-linear models to perform hypergeometric and
        chi-squared tests for gene set enrichments for two (based on
        contingency tables) or three categories (contingency cubes).
        Categories can be differentially expressed genes, GO terms,
        sequence length, GC content, chromosmal position, phylostrata,
        ....
License: GPL (>= 2)
Depends: R (>= 3.0.0), methods
Imports: MASS, hypergea (>= 1.2.3), gplots
Suggests: hgu133plus2.db, GO.db, AnnotationDbi
biocViews: BiologicalQuestion, GeneSetEnrichment, WorkflowStep, GO,
        StatisticalMethod, GeneExpression, Transcription, RNASeq,
        Microarray
Packaged: 2014-10-14 05:27:27 UTC; biocbuild
Built: R 3.1.1; ; 2014-10-14 08:52:56 UTC; windows
