FRmapping               Multiple sample comparison with a user-defined
                        reference
FRmappingSimple         Multiple sample comparisons
FRstats-class           FR statistics and p-values generated from one
                        single draw of the population pair comparison
FRvalsPerm-class        Statistics generated from the permuted
                        distribution of the observed FR statistics
SampleInfo-class        List of directories and sample files
crossMap-class          Statistics of mapping the test samples and the
                        reference sample (or the proxy reference)
flowMatch-package       Flow cytometry data cross-sample comparison
getFR                   F-R test for one population comparison
getFRest                F-R statistic estimates across two samples
getFRmat                F-R tests for two-sampbetween two samples
getFRvalsPerm           Compute statistics for the empirical
                        distribution
getMatched              Identify matched population pairs
getSomePops             Make prefiltering matrix for each test sample
makeCrossMap            Make mapping information for the meta set of
                        populations
makeRefMap              Make mapping information for the proxy
                        reference sample
makeRefSample           Make a proxy reference sample
makeSampleInfo          Prepare background files to downstream data
                        processing
matchMat-class          Matching information about a single
                        cross-sample comparison
permutePops             Permute cell population labels across two
                        samples
refMap-class            Information required to making a proxy
                        reference sample
refSample-class         Data and summary information of the proxy
                        reference sample
somePops-class          List of population pairs to be compared during
                        multiple-sample comparisons
statCrossLists          summary statistic across elements of lists
