Package: easyRNASeq
Version: 2.2.1
Date: 2015-02-11
Type: Package
Title: Count summarization and normalization for RNA-Seq data.
Author: Nicolas Delhomme, Ismael Padioleau, Bastian Schiffthaler
Maintainer: Nicolas Delhomme <delhomme@embl.de>
Description: Calculates the coverage of high-throughput short-reads against
    a genome of reference and summarizes it per feature of interest (e.g. exon,
    gene, transcript). The data can be normalized as 'RPKM' or by the 'DESeq'
    or 'edgeR' package.
Imports: Biobase (>= 2.26.0), BiocGenerics (>= 0.12.1), biomaRt (>=
        2.22.0), Biostrings (>= 2.34.1), DESeq (>= 1.18.0), edgeR (>=
        3.8.5), genomeIntervals (>= 1.22.0), GenomicAlignments (>=
        1.2.1), GenomeInfoDb (>= 1.2.4), GenomicRanges (>= 1.18.4),
        graphics, IRanges (>= 2.0.1), LSD (>= 3.0), methods, parallel,
        Rsamtools (>= 1.18.2), S4Vectors (>= 0.4.0), ShortRead (>=
        1.24.0), utils
Suggests: BiocStyle (>= 1.4.1), BSgenome (>= 1.34.1),
        BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.4.0), GenomicFeatures (>=
        1.18.3), RnaSeqTutorial (>= 0.3.1), RUnit (>= 0.4.28)
License: Artistic-2.0
LazyLoad: yes
Roxygen: list(wrap = TRUE)
biocViews: GeneExpression, RNASeq, Genetics, Preprocessing
Packaged: 2015-02-12 04:33:55 UTC; biocbuild
Built: R 3.1.2; ; 2015-02-12 08:59:17 UTC; windows
