# Analysis of amplicon enrichment panels

## Documentation for package ‘ampliQueso’ version 1.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

camelSampleTable | ampliQueso sample data
camelTest | camelTest - calculating permutation tests for camel measures (sequential and parallel versions)
compareCoverages | compareCoverages - camel measure for a single comparison.
compareCoveragesReg | compareCoveragesReg - calculating given camel measures for a list of regions specified by a BED file (sequential and parallel versions)
getCountTable | getCountTable - obtaining typical count table.
getSNP | getSNP - finding SNPs in all samples for regions specified by a BED file all regions if BED file not provided (sequential and parallel versions)
ndMax | ampliQueso sample data
ndMin | ampliQueso sample data
runAQReport | runAQReport - runing the AmpliQueso report