# R Package AffyPara - NEWS
#
# Copyright (C) 2008-2013 : Markus Schmidberger <schmidb@ibe.med.uni-muenchen.de>
###############################################################################

affyPara 1.19.2 (build 24. March 2013)
- more Sweave bugfix to get a clean build

affyPara 1.19.1 (build 23. March 2013)
- bugfix to get a clean build

affyPara 1.17.1 (build 26. Juli 2012)
- bugfix for cdfname object in read.affypara, see BioC Mailinglist, thanks Tobias

affyPara 1.11.4 (build 10. March 2011)
- bugfix for cluster object

affyPara 1.11.1 (build 17. November 2010)
- bugfix in vsnrmaPara

affyPara 1.7.4 (build 15. April 2010)
- fixes for new release

affyPara 1.7.2 (build 08. March 2010)
- gsub warning (extend=T) fixed in every function
- Copyright update

affyPara 1.7.1 (build 05. March 2010)
- preproPara, summarization == none enabled

affyPara 1.5.11 (build 14. August 2009)
- several documentation fixes (broken links)

affyPara 1.5.5 (build 10. August 2009)
- fix in computation time output for normalize.quantil
- some very simple improvements

affyPara 1.5.4 (build 23. June 2009)
- vignette update

affyPara 1.5.3 (build 30. Mai 2009)
- additional tool to boxplotPara added: bagplot
- and qaSummary added

affyPara 1.5.2 (build 27. Mai 2009)
- read.affybatchPara added

affyPara 1.4.0 (build 21. April 2009)
- new BioConductor Version 2.4

affyPara 1.3.8 (build 25. March 2009)
- Summarization optimized

affyPara 1.3.7 (build 23. March 2009)
- Option verbose set to getOption("verbose") and added . to names of internal functions

affyPara 1.3.5 (build 18. December 2008)
- New functions makeCluster and stopCluster (overloading snow functions)
-- cluster object will be saved as default parameter in .affyParaInternalEnv$cl
-- and default cluster object will be used in every preprocessing function
--> no more cluster object handling is required: improvement for usability!
- boxplotPara and MAplotPara improved
- documentation added and fixed for new structure

affyPara 1.3.4 (build 14. November 2008)
- boxplotPara improved
- MAplotPara works
- documentation added

affyPara 1.3.3 (build 12. November 2008)
- boxplotPara improved

affyPara 1.3.2 (build 28. October 2008)
- vsnPara (incl. doku) added
- affyPara now works on multiprocessor machines and mulicomputer systems correctly
- a lot of code improvements especially in data distribution

affyPara 1.2.0 (build 22. October 2008)
- new BioConductor Version 2.3

affyPara 1.1.9 (build 08. October 2008)
- finalizing for new BioConductor Version
- small code improvements in distibuteFiles (for multiprocessor machines)

affyPara 1.1.8 (build 22. August 2008)
- computeExpressionSet improved
- changelog renamed to NEWS

affyPara 1.1.7 (build 17. July 2008)
- Parallelized partial Loess normalization with Permutation added
- all Package building errors fixed
- Package cleaning

affyPara 1.1.6 (build 07. July 2008)
- mergeAffyBatches improved for great dim matrices (-> hgu133 Plus 2.0 chips)
- initAffyBatchSF: error for small numbers of nodes fixed

affyPara 1.1.5 (build 02. July 2008)
distributeFiles and removeDistributedFiles improved
- default path variable
- option for removing directory before distributing 
- some safety checks

affyPara 1.1.4 (build 23. June 2008)
normalizeAffyBatchLoessPara memory improvement

affyPara 1.1.3 (build 3. June 2008)
Vignette extended

affyPara 1.1.2 (build 28. Mai 2008)
Array Permutation over nodes added (intern function)
Parallelized Loess normalization added

affyPara 1.1.1 (build 16. Mai 2008)
Bug fix for cluster with one node.

affyPara 0.99.2 (build 28. March 2008)
object.type as input removed from all functions
Error in vignette removed
Vignette extended

affyPara 0.99.1 (build 20. March 2008
Improvement of the function distributeFiles

affyPara 0.99.0 (build 1. March 2008)
Finalizing for BioConductor release

affyPara 0.3.0 (build 19. February 2008)
Documentation added
rmaPara added
Modularization

affyPara 0.2.0 (build 8. January 2008)
Testcode affyPareTest now available
Several bugs fixed

affyPara 0.1.0 (build 15. November 2007)
Parallelized Affy-Functions
* bgCorrectPara
* justBgCorrectPara
* normalizeAffyBatchQuantilesPara
* justNormalizeAffyBatchQuantilesPara
