RUNIT TEST PROTOCOL -- Fri Dec 12 06:36:29 2014 
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Number of test functions: 19 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
VanillaICE unit testing - 19 test functions, 0 errors, 0 failures



Details 
*************************** 
Test Suite: VanillaICE unit testing 
Test function regexp: ^test.+ 
Test file regexp: ^test.+\.[rR]$ 
Involved directory: 
D:/biocbld/bbs-3.0-bioc/meat/VanillaICE.buildbin-libdir/VanillaICE/unitTests 
--------------------------- 
Test file: D:/biocbld/bbs-3.0-bioc/meat/VanillaICE.buildbin-libdir/VanillaICE/unitTests/test_ArrayViews.R 
test_ArrayViews: (10 checks) ... OK (8.81 seconds)
test_columnSubset: (1 checks) ... OK (0.19 seconds)
--------------------------- 
Test file: D:/biocbld/bbs-3.0-bioc/meat/VanillaICE.buildbin-libdir/VanillaICE/unitTests/test_FilterParam.R 
test_FilterParam: (1 checks) ... OK (0.01 seconds)
--------------------------- 
Test file: D:/biocbld/bbs-3.0-bioc/meat/VanillaICE.buildbin-libdir/VanillaICE/unitTests/test_HmmParam.R 
test_EmissionParam: (3 checks) ... OK (0.01 seconds)
--------------------------- 
Test file: D:/biocbld/bbs-3.0-bioc/meat/VanillaICE.buildbin-libdir/VanillaICE/unitTests/test_hmm.R 
test_hmm_cnset: (2 checks) ... OK (7.37 seconds)
test_oligoSnpSetGT: (1 checks) ... OK (2 seconds)
test_state4: (2 checks) ... OK (2.41 seconds)
--------------------------- 
Test file: D:/biocbld/bbs-3.0-bioc/meat/VanillaICE.buildbin-libdir/VanillaICE/unitTests/test_oligoSetList.R 
test_oligoSetList: (2 checks) ... OK (1.31 seconds)
--------------------------- 
Test file: D:/biocbld/bbs-3.0-bioc/meat/VanillaICE.buildbin-libdir/VanillaICE/unitTests/test_viterbi.R 
test_SnpArrayExperiment: (18 checks) ... OK (0.36 seconds)
test_Viterbi: (4 checks) ... OK (0 seconds)
test_baf_emission: (3 checks) ... OK (0.07 seconds)
test_cn_NAs: (3 checks) ... OK (0.09 seconds)
test_emission_for_list: (3 checks) ... OK (0.16 seconds)
test_emission_update: (3 checks) ... OK (0.68 seconds)
test_multiple_chromosomes: (2 checks) ... OK (1.54 seconds)
test_null_assignment: (2 checks) ... OK (0.71 seconds)
test_oligoset_comparison: (1 checks) ... OK (0.24 seconds)
test_summarized_exp: (1 checks) ... OK (0.08 seconds)
test_updating: (4 checks) ... OK (0.11 seconds)
