Package: ToPASeq
Type: Package
Title: Package for Topology-based Pathway Analysis of RNASeq data
Version: 1.0.1
Date: 2014-27-05
Author: Ivana Ihnatova, Eva Budinska
Maintainer: Ivana Ihnatova <ihnatova@iba.muni.cz>
Description: Implementation of seven methods for topology-based pathway
        analysis of both RNASeq and microarray data: SPIA, DEGraph,
        TopologyGSA, TAPPA, TBS, PWEA and a visualization tool for a
        single pathway.
Depends: graphite, gRbase, graph, locfit
Imports: R.utils, edgeR, DESeq2, GenomicRanges, igraph, DESeq, fields,
        limma, TeachingDemos, SPIA, clipper, topologyGSA
Suggests: RUnit, BiocGenerics, gageData, Rgraphviz, DEGraph
LazyData: yes
License: AGPL-3
biocViews: Software, GeneExpression, NetworkEnrichment,
        GraphAndNetwork, RNASeq, Visualization, Microarray, Pathways,
        DifferentialExpression,
Packaged: 2014-11-14 06:04:32 UTC; biocbuild
Built: R 3.1.2; ; 2014-11-14 14:02:53 UTC; windows
