Package: TFBSTools
Version: 1.4.0
Date: 2014-10-02
Title: Software package for transcription factor binding site (TFBS)
        analysis
Description: TFBSTools is a package for the analysis and manipulation of transcription factor binding sites and transcription factor profile matrices.
Author: Ge Tan <ge.tan09@imperial.ac.uk> 
Maintainer: Ge Tan <ge.tan09@imperial.ac.uk>
Imports: Biostrings(>= 2.33.3), RSQLite(>= 0.11.4), seqLogo,
        GenomicRanges(>= 1.17.7), caTools(>= 1.14), XVector(>= 0.5.8),
        rtracklayer(>= 1.25.3), BSgenome(>= 1.30.0), S4Vectors(>=
        0.2.3), IRanges(>= 1.99.28), methods, gtools(>= 3.0.0), CNEr(>=
        0.99.8), BiocParallel(>= 0.5.6), DirichletMultinomial(>=
        1.7.1), TFMPvalue(>= 0.0.5)
Depends: R (>= 3.0.1)
Suggests: JASPAR2014(>= 0.99.3), RUnit, BiocGenerics, BiocStyle
SystemRequirements: meme
License: GPL-2
URL: http://jaspar.genereg.net/
Type: Package
biocViews: MotifAnnotation, GeneRegulation, MotifDiscovery
NeedsCompilation: yes
LazyData: yes
Collate: AllGenerics.r AllClasses.r show-methods.r util-methods.r
        XMatrix-methods.r XMatrixList-methods.r SiteSet-methods.r
        coercion-methods.r DB-methods.r PairwiseAlignment-methods.r
        ICM-methods.r PWM-methods.r Motif-methods.r PFM-methods.r
        Wrappers-methods.r DirichletMixture.r
Packaged: 2014-10-14 04:40:59 UTC; biocbuild
Built: R 3.1.1; i386-w64-mingw32; 2014-10-14 13:58:55 UTC; windows
Archs: i386, x64
