Package: TEQC
Type: Package
Title: Quality control for target capture experiments
Version: 3.6.0
Date: 2014-09-12
Author: M. Hummel, S. Bonnin, E. Lowy, G. Roma
Maintainer: Manuela Hummel <m.hummel@dkfz.de>
Description: Target capture experiments combine hybridization-based (in
        solution or on microarrays) capture and enrichment of genomic
        regions of interest (e.g. the exome) with high throughput
        sequencing of the captured DNA fragments. This package provides
        functionalities for assessing and visualizing the quality of
        the target enrichment process, like specificity and sensitivity
        of the capture, per-target read coverage and so on.
Depends: methods, BiocGenerics (>= 0.1.0), IRanges (>= 1.13.5),
        Rsamtools, hwriter
Imports: Biobase (>= 2.15.1)
License: GPL (>= 2)
LazyLoad: yes
biocViews: QualityControl, Microarray, Sequencing, Genetics
Packaged: 2014-10-14 03:19:00 UTC; biocbuild
Built: R 3.1.1; ; 2014-10-14 13:58:22 UTC; windows
