Package: SomaticSignatures
Type: Package
Title: Somatic Signatures
Version: 2.2.3
Author: Julian Gehring (EMBL Heidelberg)
Maintainer: Julian Gehring <julian.gehring@embl.de>
Description: The SomaticSignatures package identifies mutational signatures of single nucleotide variants (SNVs).
URL:
        http://bioconductor.org/packages/release/bioc/html/SomaticSignatures.html,
        https://github.com/julian-gehring/SomaticSignatures
Imports: S4Vectors, IRanges, GenomeInfoDb, Biostrings, ggplot2, ggbio,
        reshape2, NMF, pcaMethods, Biobase, methods, proxy
Depends: R (>= 3.0.2), VariantAnnotation, GenomicRanges
Suggests: testthat, knitr, parallel, BSgenome.Hsapiens.UCSC.hg19,
        SomaticCancerAlterations, COSMIC.67, ggdendro, fastICA
VignetteBuilder: knitr
ByteCompile: TRUE
License: GPL-3
LazyLoad: yes
biocViews: Sequencing, SomaticMutation, Visualization, Clustering,
        GenomicVariation, StatisticalMethod
Packaged: 2014-11-02 04:39:38 UTC; biocbuild
Built: R 3.1.2; ; 2014-11-02 13:17:24 UTC; windows
