Package: SGSeq
Type: Package
Title: Prediction, quantification and visualization of alternative
        transcript events from RNA-seq data
Version: 1.0.6
Author: Leonard Goldstein
Maintainer: Leonard Goldstein <goldstel@gene.com>
Description: RNA-seq data are informative for the analysis of known and
             novel transcript isoforms. While the short length of RNA-seq
             reads limits the ability to predict and quantify full-length
             transcripts, short read data are well suited for the analysis
             of individual alternative transcripts events (e.g. inclusion
             or skipping of a cassette exon). The SGSeq package enables the
             prediction, quantification and visualization of alternative
             transcript events from BAM files.
License: Artistic-2.0
LazyData: yes
Depends: BiocParallel, GenomicRanges, IRanges, methods
Imports: AnnotationDbi, BiocGenerics, Biostrings, GenomicAlignments,
        GenomicFeatures, GenomeInfoDb, igraph, parallel, Rsamtools,
        rtracklayer, S4Vectors (>= 0.2.3)
Suggests: BiocStyle, knitr, TxDb.Hsapiens.UCSC.hg19.knownGene
VignetteBuilder: knitr
biocViews: AlternativeSplicing, RNASeq, Transcription
Packaged: 2014-11-19 05:56:15 UTC; biocbuild
Built: R 3.1.2; ; 2014-11-19 13:22:18 UTC; windows
