# Spatial Analysis of Network Associations

## Documentation for package ‘SANTA’ version 2.2.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

BinGraph | Compute a distance bin matrix from a distance matrix
Compactness | Measure the strength of association using compactness scores
CreateGrid | Generate a grid-like network
DistGraph | Compute the vertex pair distance matrix for a graph
edgelist.humannet | Pre-processed dataset for the SANTA vignette
edgelist.intact | Pre-processed dataset for the SANTA vignette
g.bandyopadhyay.treated | Pre-processed dataset for the SANTA vignette
g.bandyopadhyay.untreated | Pre-processed dataset for the SANTA vignette
g.costanzo.cor | Pre-processed dataset for the SANTA vignette
g.costanzo.raw | Pre-processed dataset for the SANTA vignette
g.srivas.high | Pre-processed dataset for the SANTA vignette
g.srivas.untreated | Pre-processed dataset for the SANTA vignette
go.entrez | Pre-processed dataset for the SANTA vignette
GraphDiffusion | Compute diffusion kernel-based distance matrix
GraphMFPT | Compute mean first-passage time-based distance matrix
Knet | Measure the strength of association between a phenotype and a network by computing the strength of hit clustering on the network
Knode | Rank vertices by their strength of association with high-weight vertices
plot.Knet | Plot the results of the 'Knet' function
rnai.cheung | Pre-processed dataset for the SANTA vignette
SpreadHits | Spread hits across a network in clusters