# Optimyzed Cellular Hierarchies for Flow Cytometry

## Documentation for package ‘RchyOptimyx’ version 2.6.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

RchyOptimyx-package | Gating Hierarchy Optimization for Flow Cytometry
HIVData | HIVData
LogRankPvals | HIVData
marker.names | HIVData
merge | Merges two OptimizedHierarchy objects.
merge-method | Merges two OptimizedHierarchy objects.
merge-methods | Merges two OptimizedHierarchy objects.
OverlapScores | HIVData
PhenoCodes | HIVData
plot | Plots an optimized cellular hierarchy
plot-method | Plots an optimized cellular hierarchy
RchyOptimyx | Gating Hierarchy Optimization for Flow Cytometry
RchyOptimyx-method | Gating Hierarchy Optimization for Flow Cytometry
RchyOptimyx-methods | Gating Hierarchy Optimization for Flow Cytometry
summary-method | ~~ Methods for Function summary ~~
summary-methods | ~~ Methods for Function summary ~~