Package: Rariant
Type: Package
Title: Identification and Assessment of Single Nucleotide Variants
        through Shifts in Non-Consensus Base Call Frequencies
Version: 1.2.0
Author: Julian Gehring, Simon Anders, Bernd Klaus (EMBL Heidelberg)
Maintainer: Julian Gehring <julian.gehring@embl.de>
Imports: IRanges, ggbio, ggplot2, exomeCopy, SomaticSignatures,
        Rsamtools, shiny, methods, VGAM, dplyr, reshape2, GenomeInfoDb,
        S4Vectors
Depends: R (>= 3.0.2), GenomicRanges, VariantAnnotation
Suggests: h5vcData, testthat, knitr, optparse,
        BSgenome.Hsapiens.UCSC.hg19
Description: The 'Rariant' package identifies single nucleotide variants from sequencing data based on the difference of binomially distributed mismatch rates between matched samples.
VignetteBuilder: knitr
Encoding: UTF-8
ByteCompile: TRUE
License: GPL-3
LazyLoad: yes
biocViews: Sequencing, StatisticalMethod, GenomicVariation,
        SomaticMutation, VariantDetection, Visualization
Packaged: 2014-10-14 04:58:28 UTC; biocbuild
Built: R 3.1.1; ; 2014-10-14 12:26:24 UTC; windows
