as.matrix.PhenList	asmatrix
boxplotResidualBatch	boxplotResidualBatch
boxplotSexGenotype	boxplotSexGenotype
boxplotSexGenotypeBatch	boxplotSexGenotypeBatch
categoricalBarplot	categoricalBarplot
checkDataset	checkDataset
classificationTag	classificationTag
columnChecks	columnChecks
columnLevels	columnLevels
dim.PhenList	dim
dimnames.PhenList	dimnames
dimnames<-.PhenList	dimnames
finalModel	finalModel
finalTFModel	finalTFModel
FisherExactTest	FisherExactTest
generateGraphs	generateGraphs
LargeDataObject-class	LargeDataObject-class
method.PhenTestResult	method
modelFormula	modelFormula
parserOutputSummary	parserOutputSummary
parserOutputTFSummary	parserOutputTFSummary
PhenList	PhenList
PhenList-class	PhenList-class
PhenTestResult	PhenTestResult
PhenTestResult-class	PhenTestResult-class
plotResidualPredicted	plotResidualPredicted
printHead,LargeDataObject-method	LargeDataObject-class
printTabStyle	printTabStyle
qqplotGenotype	qqplotGenotype
qqplotRandomEffects	qqplotRandomEffects
qqplotRotatedResiduals	qqplotRotatedResiduals
recommendMethod	recommendMethod
RRTest	RRTest
scatterplotGenotypeWeight	scatterplotGenotypeWeight
scatterplotSexGenotypeBatch	scatterplotSexGenotypeBatch
show,LargeDataObject-method	LargeDataObject-class
startModel	startModel
startTFModel	startTFModel
summaryOutput	summaryOutput
testDataset	testDataset
testFinalModel	testFinalModel
TFDataset	TFDataset
vectorOutput	vectorOutput
vectorOutputMatrices	vectorOutputMatrices
