addData	readData
Biodetection	Biodetection
Biodetection-class	Biodetection
CD	CD
CD-class	CD
CountsBio	CountsBio
CountsBio-class	CountsBio
dat	dat
dat2save	dat2save
dat2save,Biodetection-method	Biodetection
dat2save,CD-method	CD
dat2save,CountsBio-method	CountsBio
dat2save,GCbias-method	GCcontentBias
dat2save,lengthbias-method	LengthBias
dat2save,Saturation-method	Saturation
DE.plot	DE.plot
degenes	degenes
explo.plot	explo.plot
explo.plot,Biodetection-method	Biodetection
explo.plot,CD-method	CD
explo.plot,CountsBio-method	CountsBio
explo.plot,GCbias-method	GCcontentBias
explo.plot,lengthbias-method	LengthBias
explo.plot,Saturation-method	Saturation
filtered.data	filter.low.counts
GCbias	GCcontentBias
GCbias-class	GCcontentBias
lengthbias	LengthBias
lengthbias-class	LengthBias
mybiotypes	Marioni
mychroms	Marioni
myCounts	myCounts
mycounts	Marioni
myCounts-class	myCounts
mydata	example
myfactors	Marioni
mygc	Marioni
mylength	Marioni
mynoiseq	example
noiseq	noiseq
noiseqbio	noiseqbio
Output	Output
Output-class	Output
QCreport	QCreport
readData	readData
rpkm	normalization
Saturation	Saturation
saturation	Saturation
Saturation-class	Saturation
show,Biodetection-method	Biodetection
show,CD-method	CD
show,CountsBio-method	CountsBio
show,GCbias-method	GCcontentBias
show,lengthbias-method	LengthBias
show,Output-method	Output
show,Saturation-method	Saturation
tmm	normalization
uqua	normalization
