Package: MEDIPS
Type: Package
Title: (MeD)IP-seq data analysis
Version: 1.16.0
Date: 2013-07-09
Author: Lukas Chavez, Matthias Lienhard, Joern Dietrich
Maintainer: Lukas Chavez <lchavez@liai.org>
Description: MEDIPS was developed for analyzing data derived from
        methylated DNA immunoprecipitation (MeDIP) experiments followed
        by sequencing (MeDIP-seq). However, MEDIPS provides several
        functionalities for the analysis of other kinds of quantitative
        sequencing data (e.g. ChIP-seq, MBD-seq, CMS-seq and others)
        including calculation of differential coverage between groups
        of samples as well as saturation and correlation analyses.
License: GPL (>=2)
LazyLoad: yes
Depends: R (>= 3.0), BSgenome, DNAcopy
Imports: Biostrings, BSgenome, Rsamtools, graphics, gtools, IRanges,
        methods, stats, utils, GenomicRanges, edgeR, GenomicFeatures,
        DNAcopy, biomaRt, rtracklayer
Suggests: BSgenome, BSgenome.Hsapiens.UCSC.hg19, MEDIPSData
biocViews: DNAMethylation, CpGIsland, DifferentialExpression,
        Sequencing, ChIPSeq, Preprocessing, QualityControl,
        Visualization
Packaged: 2014-10-14 03:18:31 UTC; biocbuild
Built: R 3.1.1; ; 2014-10-14 10:27:55 UTC; windows
