# Distributed computing by file or by range

## Documentation for package ‘GenomicFiles’ version 1.2.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

BamFileViews | Views into a set of BAM files
BamFileViews-class | Views into a set of BAM files
BamFileViews-method | Views into a set of BAM files
BigWigFileViews | Views into a set of BigWig files
BigWigFileViews-class | Views into a set of BigWig files
BigWigFileViews-method | Views into a set of BigWig files
class:GenomicFiles | GenomicFiles objects
class:GenomicFileViews | Views into a set of files
colData-method | GenomicFiles objects
colData<--method | GenomicFiles objects
countBam-method | Views into a set of BAM files
coverage-method | Views into a set of BigWig files
dim-method | Views into a set of files
dim-method | GenomicFiles objects
dimnames-method | Views into a set of files
dimnames-method | GenomicFiles objects
dimnames<--method | Views into a set of files
dimnames<--method | GenomicFiles objects
exptData-method | GenomicFiles objects
exptData<--method | GenomicFiles objects
FaFileViews | Views into a set of Fasta files
FaFileViews-class | Views into a set of Fasta files
FaFileViews-method | Views into a set of Fasta files
fileExperiment | Views into a set of files
fileExperiment<- | Views into a set of files
fileList | Views into a set of files
fileList<- | Views into a set of files
fileRange | Views into a set of files
fileRange<- | Views into a set of files
files | GenomicFiles objects
files-method | GenomicFiles objects
files<- | GenomicFiles objects
files<--method | GenomicFiles objects
fileSample | Views into a set of files
fileSample<- | Views into a set of files
findTypeRegistry | Functions for creating and searching a registry of file types.
GenomicFiles | GenomicFiles objects
GenomicFiles-class | GenomicFiles objects
GenomicFiles-method | GenomicFiles objects
GenomicFileViews | Views into a set of files
GenomicFileViews-class | Views into a set of files
isPacked | Range transformations of a 'GenomicRanges' object for optimal file queries.
makeFileType | Functions for creating and searching a registry of file types.
names-method | Views into a set of files
names<--method | Views into a set of files
pack | Range transformations of a 'GenomicRanges' object for optimal file queries.
pack-method | Range transformations of a 'GenomicRanges' object for optimal file queries.
reduceBy | Parallel computations across files or ranges
reduceByFile | Parallel computations across files or ranges
reduceByFile-method | Parallel computations across files or ranges
reduceByRange | Parallel computations across files or ranges
reduceByRange-method | Parallel computations across files or ranges
reduceByYield | Iterate through a BAM (or other) file, reducing output to a single result.
reduceFiles | Parallel computations across files or ranges
reduceRanges | Parallel computations across files or ranges
registerFileType | Functions for creating and searching a registry of file types.
registry-utils | Functions for creating and searching a registry of file types.
rowData-method | GenomicFiles objects
rowData<--method | GenomicFiles objects
scanBam-method | Views into a set of BAM files
show-method | Views into a set of files
show-method | GenomicFiles objects
summarizeOverlaps-method | Views into a set of BAM files
summary-method | Views into a set of BigWig files
unpack | Un-pack results obtained with a pack()ed group of ranges
unpack-method | Un-pack results obtained with a pack()ed group of ranges
yieldSize-method | Views into a set of files
yieldSize<--method | Views into a set of files
[-method | Views into a set of files
[-method | GenomicFiles objects