as.list,TxDb-method	TxDb-class
asBED,TxDb-method	as-format-methods
asGFF,TxDb-method	as-format-methods
cds	transcripts
cds,TxDb-method	transcripts
cdsBy	transcriptsBy
cdsBy,TxDb-method	transcriptsBy
cdsByOverlaps	transcriptsByOverlaps
cdsByOverlaps,TxDb-method	transcriptsByOverlaps
class:FeatureDb	FeatureDb-class
class:TxDb	TxDb-class
columns,TxDb-method	select-methods
DEFAULT_CIRC_SEQS	DEFAULT_CIRC_SEQS
determineDefaultSeqnameStyle	deprecated
determineDefaultSeqnameStyle,TxDb-method	deprecated
disjointExons	transcripts
disjointExons,TxDb-method	transcripts
distance,GenomicRanges,TxDb-method	nearest-methods
exons	transcripts
exons,TxDb-method	transcripts
exonsBy	transcriptsBy
exonsBy,TxDb-method	transcriptsBy
exonsByOverlaps	transcriptsByOverlaps
exonsByOverlaps,TxDb-method	transcriptsByOverlaps
extractTranscripts	extractTranscriptsFromGenome
extractTranscriptSeqs	extractTranscriptSeqs
extractTranscriptSeqs,ANY-method	extractTranscriptSeqs
extractTranscriptSeqs,DNAString-method	extractTranscriptSeqs
extractTranscriptsFromGenome	extractTranscriptsFromGenome
extractUpstreamSeqs	extractUpstreamSeqs
extractUpstreamSeqs,GenomicRanges-method	extractUpstreamSeqs
extractUpstreamSeqs,GRangesList-method	extractUpstreamSeqs
extractUpstreamSeqs,TxDb-method	extractUpstreamSeqs
FeatureDb	FeatureDb-class
FeatureDb-class	FeatureDb-class
features	features
features,FeatureDb-method	features
fiveUTRsByTranscript	transcriptsBy
fiveUTRsByTranscript,TxDb-method	transcriptsBy
genes	transcripts
genes,TxDb-method	transcripts
GenomicFeatures-deprecated	deprecated
getChromInfoFromBiomart	makeTranscriptDbFromBiomart
getChromInfoFromUCSC	makeTranscriptDbFromUCSC
getPromoterSeq	getPromoterSeq-methods
getPromoterSeq,GRanges-method	getPromoterSeq-methods
getPromoterSeq,GRangesList-method	getPromoterSeq-methods
id2name	id2name
intronsByTranscript	transcriptsBy
intronsByTranscript,TxDb-method	transcriptsBy
isActiveSeq	TxDb-class
isActiveSeq,TxDb-method	TxDb-class
isActiveSeq<-	TxDb-class
isActiveSeq<-,TxDb-method	TxDb-class
keys,TxDb-method	select-methods
keytypes,TxDb-method	select-methods
makeFDbPackageFromUCSC	makeTxDbPackage
makeFeatureDbFromUCSC	makeFeatureDbFromUCSC
makeTranscriptDb	makeTranscriptDb
makeTranscriptDbFromBiomart	makeTranscriptDbFromBiomart
makeTranscriptDbFromGFF	makeTranscriptDbFromGFF
makeTranscriptDbFromUCSC	makeTranscriptDbFromUCSC
makeTxDbPackage	makeTxDbPackage
makeTxDbPackageFromBiomart	makeTxDbPackage
makeTxDbPackageFromUCSC	makeTxDbPackage
microRNAs	transcripts
microRNAs,TxDb-method	transcripts
nearest-methods	nearest-methods
promoters,TxDb-method	transcripts
select,TxDb-method	select-methods
select-methods	select-methods
seqinfo,TxDb-method	TxDb-class
seqinfo<-,TxDb-method	TxDb-class
show,TxDb-method	TxDb-class
sortExonsByRank	extractTranscriptsFromGenome
supportedMiRBaseBuildValues	makeTxDbPackage
supportedUCSCFeatureDbTables	makeFeatureDbFromUCSC
supportedUCSCFeatureDbTracks	makeFeatureDbFromUCSC
supportedUCSCtables	makeTranscriptDbFromUCSC
threeUTRsByTranscript	transcriptsBy
threeUTRsByTranscript,TxDb-method	transcriptsBy
transcriptLocs2refLocs	transcriptLocs2refLocs
transcripts	transcripts
transcripts,TxDb-method	transcripts
transcriptsBy	transcriptsBy
transcriptsBy,TxDb-method	transcriptsBy
transcriptsByOverlaps	transcriptsByOverlaps
transcriptsByOverlaps,TxDb-method	transcriptsByOverlaps
transcriptWidths	transcriptLocs2refLocs
tRNAs	transcripts
tRNAs,TxDb-method	transcripts
TxDb	TxDb-class
TxDb-class	TxDb-class
UCSCFeatureDbTableSchema	makeFeatureDbFromUCSC
