bcb46671f9de67f4c98c54cd2fb7b0a6 *CITATION
b8d96e11bf426987a7326ed268e5b2cf *DESCRIPTION
09fdff7691b3aa8cc1e4093de0badea8 *INDEX
b4e2bd90cbbe2930fb7ce70ceda0ed88 *Meta/Rd.rds
0549273de32bd99d4a358456885bf515 *Meta/hsearch.rds
db34306d045a2b633fb2e3cec32fb739 *Meta/links.rds
66293fc62d499aca68be059b5db9011d *Meta/nsInfo.rds
8075c4c0ead7ced738f9a12708ba8bfc *Meta/package.rds
e1d31cf4b89f5e6f2c936155bcbc5fe0 *Meta/vignette.rds
40e1cc5088be1d2dd7658af596cbc2bb *NAMESPACE
b24f0e741b3e25af45bd849a5703ba0b *NEWS.Rd
ebf0fc819595d631b8bf280c4b049940 *R/GenomicAlignments
a95f707adfc837166cf5302b54427e89 *R/GenomicAlignments.rdb
e4ca9188a9f5cb9c33e313dae6ec7d3b *R/GenomicAlignments.rdx
09c619b8aae2fff2226412994ab5d2f0 *doc/OverlapEncodings.R
159562ab513dc4ce6879576c2742b2f2 *doc/OverlapEncodings.Rnw
fd9846284318d3c631e85efe60ac2427 *doc/OverlapEncodings.pdf
fefe6ab83378e1021ae62b51ca854ef2 *doc/WorkingWithAlignedNucleotides.R
7ffa5eec2eb7b955ca22579bb869bff8 *doc/WorkingWithAlignedNucleotides.Rnw
acdd8a616ef072b0357a509b28a9bc9c *doc/WorkingWithAlignedNucleotides.pdf
6dd86252b0a4f4ccb6243c4a3e6c5bcf *doc/index.html
1db3b1c017fe4cd644c6e44d96816ad2 *doc/summarizeOverlaps.R
43227b456a35c52e6636caba03951f02 *doc/summarizeOverlaps.Rnw
42f26a7bea9dc3c2d2d71fb2f090e873 *doc/summarizeOverlaps.pdf
1c380f8159fda8fad5d0d4902ae9ea23 *extdata/sm_treated1.bam
af83f784077fcced98e3603bb7ad7a4e *extdata/sm_untreated1.bam
6703817e6deedcc47512e8f1231779a6 *help/AnIndex
3d4b3fe0d866f543aaca3e99fdeefdab *help/GenomicAlignments.rdb
dd5273db8634d09bb66eb91daf48241d *help/GenomicAlignments.rdx
b9874f587e4b6d394eee6352dfbdf728 *help/aliases.rds
746cd176986d5e19d1da522f73f6bc2f *help/paths.rds
3548ac6d2cee1faea717cec81d5a9973 *html/00Index.html
444535b9cb76ddff1bab1e1865a3fb14 *html/R.css
fa7f696ab7044cc491ed7c921e14787a *libs/i386/GenomicAlignments.dll
3185b6a537493ed00bf4d37c275cc46c *libs/x64/GenomicAlignments.dll
006658c9b51f09d15581526e4c1b8d30 *unitTests/test_GAlignments-class.R
fe4c3096b938b5bf4a003a5b942edfc6 *unitTests/test_GAlignmentsList-class.R
30e138d55e47b12b492623e48ca508de *unitTests/test_cigar-utils.R
0297704686379bd374bc14d19e6fd61d *unitTests/test_findSpliceOverlaps-methods.R
03c20128d1742334efd9c564122e1e4b *unitTests/test_intra-range-methods.R
5ad82941f22ec4b4d2e675254cbf1eb6 *unitTests/test_readGAlignmentPairsFromBam.R
900fb116c027c45378c21dff7ab22e9b *unitTests/test_readGAlignmentsFromBam.R
dc7136a19c694214f06b26adeb6ff71d *unitTests/test_readGAlignmentsListFromBam.R
526b7ac954749a5c28ed0d42adceaa58 *unitTests/test_summarizeOverlaps-methods.R
