import("Biobase")
import("graph")
import("KEGGgraph")

importFrom("MASS", truehist)
importFrom("RColorBrewer", brewer.pal)
importFrom("stringr", str_trim)
importFrom("neaGUI", nea)
importFrom("SPIA", spia)
importFrom("safe", safe)
importFrom("limma", lmFit, makeContrasts, contrasts.fit, eBayes, topTable)
importFrom("qvalue", qvalue)
importFrom("mixtools", normalmixEM, rnormmix)
importFrom("Rgraphviz", layoutGraph, renderGraph, edgeData)
importFrom("KEGGREST", keggLink, keggList, keggGet, keggConv)

export( 
    read.eset, 
    de.ana,
    pdistr,
    volcano,
    exprs.heatmap,
    probe.2.gene.eset, 
    get.kegg.genesets,
    parse.genesets.from.GMT,
    sbea.methods,
    sbea, 
    gs.ranking,
    download.kegg.pathways, 
    compile.grn.from.kegg,
    nbea.methods,
    nbea,
    ggea.graph,
    ggea.graph.legend,
    ea.browse,
    comb.ea.results,
    ebrowser
)
