Package: DiffBind
Type: Package
Version: 1.12.3
Title: Differential Binding Analysis of ChIP-Seq peak data
Date: 2014-1-27
Author: Rory Stark<rory.stark@cruk.cam.ac.uk>, Gordon Brown
        <gordon.brown@cruk.cam.ac.uk>
Maintainer: Rory Stark<rory.stark@cruk.cam.ac.uk>
Description: Compute differentially bound sites from multiple ChIP-seq
        experiments using affinity (quantitative) data. Also enables
        occupancy (overlap) analysis and plotting functions.
License: Artistic-2.0
LazyLoad: yes
Depends: R (>= 2.15.0), GenomicRanges, limma, GenomicAlignments
Imports: RColorBrewer, amap, edgeR (>= 2.3.58), gplots, grDevices,
        stats, utils, IRanges, zlibbioc, lattice, S4Vectors
Suggests: DESeq, Rsamtools, DESeq2, BiocStyle
Enhances: rgl, parallel, BiocParallel
LinkingTo: Rsamtools
Collate: core.R parallel.R counts.R contrast.R analyze.R io.R helper.R
        utils.R overLapper.R cpp_wrapper.R DBA.R
biocViews: Sequencing, ChIPSeq, DifferentialPeakCalling
Packaged: 2015-03-11 03:12:15 UTC; biocbuild
Built: R 3.1.3; i386-w64-mingw32; 2015-03-11 07:56:43 UTC; windows
Archs: i386, x64
