DOSE-package	DOSE-package
ALLEXTID	ALLEXTID
ALLEXTID.DO	ALLEXTID.DO
ALLEXTID.DOLite	ALLEXTID.DOLite
barplot.enrichResult	barplot.enrichResult
cnetplot	cnetplot-methods
cnetplot,enrichResult,ANY-method	cnetplot-methods
cnetplot,enrichResult-method	enrichResult-class
cnetplot.internal	cnetplot.internal
computeIC	computeIC
DataSet	DataSet
DO2ALLEG	DataSet
DO2EG	DataSet
DOLite2EG	DataSet
DOLiteTerm	DataSet
DOSE	DOSE-package
DOSEEnv	DataSet
doSim	doSim
EG2ALLDO	DataSet
EG2DO	DataSet
EG2DOLite	DataSet
enrich.internal	enrich.internal
enrichDO	enrichDO
enrichMap	enrichMap
enrichResult-class	enrichResult-class
EXTID2NAME	EXTID2NAME
EXTID2TERMID	EXTID2TERMID
EXTID2TERMID.DO	EXTID2TERMID.DO
EXTID2TERMID.DOLite	EXTID2TERMID.DOLite
fortify.enrichResult	fortify.enrichResult
fortify.gseaResult	fortify.gseaResult
gene2DO	gene2DO
geneList	DataSet
geneSim	geneSim
getALLEG	getALLEG
getGeneSet	getGeneSet
getGeneSet.DO	getGeneSet.DO
getGeneSet.DOLite	getGeneSet.DOLite
gsea	gsea
gseahResult-class	gseaResult-class
gseAnalyzer	gseAnalyzer
gseaplot	gseaplot
gseaResult-class	gseaResult-class
IC	DataSet
Info_Contents_human_DO	DataSet
list2graph	list2graph
netplot	netplot
plot	plot-methods
plot,enrichResult,ANY-method	plot-methods
plot,enrichResult-method	enrichResult-class
plot,gseaResult,ANY-method	plot-methods
plot,gseaResult-method	gseaResult-class
rebuildAnnoData	rebuildAnnoData
scaleNodeColor	scaleNodeColor
setReadable	setReadable
setting.graph.attributes	setting.graph.attributes
show	show-methods
show,enrichResult-method	enrichResult-class
show,gseaResult-method	gseaResult-class
simplot	simplot
summary	summary-methods
summary,enrichResult-method	enrichResult-class
summary,gseaResult-method	gseaResult-class
TERM2NAME	TERM2NAME
TERM2NAME.DO	TERM2NAME.DO
TERM2NAME.DOLite	TERM2NAME.DOLite
TERMID2EXTID	TERMID2EXTID
TERMID2EXTID.DO	TERMID2EXTID.DO
TERMID2EXTID.DOLite	TERMID2EXTID.DOLite
theme_dose	theme_dose
