Package: DOSE
Type: Package
Title: Disease Ontology Semantic and Enrichment analysis
Version: 2.4.0
Author: Guangchuang Yu, Li-Gen Wang
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Description: This package implements five methods proposed by
    Resnik, Schlicker, Jiang, Lin and Wang respectively
    for measuring semantic similarities among DO terms and
    gene products. Enrichment analyses including hypergeometric
    model and gene set enrichment analysis are also implemented
    for discovering disease associations of high-throughput
    biological data.
Depends: R (>= 3.0.0)
Imports: methods, plyr, qvalue, stats4, AnnotationDbi, DO.db, igraph,
        scales, reshape2, graphics, GOSemSim, grid, ggplot2
Suggests: org.Hs.eg.db, clusterProfiler, ReactomePA, ChIPseeker, knitr
VignetteBuilder: knitr
License: Artistic-2.0
URL: https://github.com/GuangchuangYu/DOSE
Packaged: 2014-10-14 03:27:49 UTC; biocbuild
biocViews: Annotation, Visualization, MultipleComparison,
        GeneSetEnrichment
Built: R 3.1.1; ; 2014-10-14 08:09:30 UTC; windows
