# DNA copy number data analysis

## Documentation for package ‘DNAcopy’ version 1.40.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Code demos. Use demo() to run them.

## Help Pages

CNA | Create 'Copy Number Array' data object
coriell | Array CGH data set of Coriell cell lines
cytoBand | Cytogenic band data
default.DNAcopy.bdry | Sequential stopping boundary
DNAcopy | Results of segmenting a CNA data object
exon.segment | Binary segmentation of exon data.
getbdry | Sequential stopping boundary
glFrequency | Additional summary measured for the segments
plot.DNAcopy | Plot the data and results from segment of a CNA object
plotSample | Plot the data and results from segmentation for a single sample
print.CNA | Create 'Copy Number Array' data object
print.DNAcopy | Results of segmenting a CNA data object
segment | Genome Segmentation Program
segments.p | p-values for the change-points
segments.summary | Additional summary measured for the segments
smooth.CNA | Smooth a 'Copy Number Array' data object
subset.CNA | Subset a 'Copy Number Array' data object
subset.DNAcopy | Subset a DNAcopy data object
zoomIntoRegion | Zoomed in view of genomic region