# DMRforPairs: identifying Differentially Methylated Regions between unique samples using array based methylation profiles

## Documentation for package ‘DMRforPairs’ version 1.2.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

DMRforPairs-package | DMRforPairs package
calc_stats | CALCULATE DESCRIPTIVE AND TEST STATISTICS
CL.methy | METHYLATION DATA OF 4 CELL LINES (CHR 7)
DMRforPairs | WRAPPER FOR THE DMRforPairs ANALSYSIS
example_output_DMRforPairs | EXAMPLE OF DMRforPairs RESULTS
export_data | COMPLETE EXPORT AND VISUALIZATION OF DMRforPairs RESULTS
merge_classes | MERGE ILLUMINA PROBE CLASSES
plot_annotate_custom_region | PLOT METHYLATION OF A CUSTOM GENOMIC REGION
plot_annotate_gene | PLOT METHYLATION VALUES AROUND A GENE
plot_annotate_probes | PLOT METHYLATION+ANNOTATE A SET OF PROBES
plot_annotate_region | PLOT METHYLATION AND ANNOTATE REGION
regionfinder | IDENTIFICATION OF PROBE DENSE REGIONS
testregion | METHYLATION DIFFERENECE & TESTING FOR 1 REGIONID
tune_parameters | TUNE MIN_DISTANCE AND MIN_N PARAMETERS